In an effort to avoid filling $TMPDIR with stray files, let's close all Tempfiles after we are done with them. Additionally, add an around-filter to each test in the integration suite to catch cases where we don't do this. This exposes issues around re-processing a subset of our attached files: it leaves Tempfiles around. Mark that test as skipped (with a detailed explanation) because we cannot figure out how to make it work. Related to #1326.
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